RetrogeneDB ID: | retro_itri_1149 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393386.1:4591152..4591689(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSSTOG00000008083 | ||
Aliases: | None | ||
Description: | FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220] |
Percent Identity: | 65.22 % |
Parental protein coverage: | 90.86 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | GKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKQKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHI-- |
GK.KK.RKY.T.K.MLS.RDERLKEKD.LKPK.KQKK.PSALKER.VP.HPSCLFFQYNT.LG..YHI.. | |
Retrocopy | GK*KKARKYVTVK*MLSFRDERLKEKDGLKPKNKQKKGPSALKERKVPHHPSCLFFQYNTHLGSLYHISW |
Parental | LVDTNFINFSIK-AKLDLVQSMMDCLYAKCIPCITD-CVMAEIEKLGQKYRVALRIAKDPRFER-LPCTH |
L..T.FI.F..K.AKL.LVQ..MDCLYAKCIPC.TD..VM.EIEKLGQKY.VALRI.K.P.FE....... | |
Retrocopy | LLPTLFI-FPLK<AKLELVQLLMDCLYAKCIPCVTD<LVMTEIEKLGQKY*VALRIEKNPQFEQ<MIMNT |
Parental | KGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYIS |
KGT.A.DCLV..VTQ.KCYI..TVD.D.........G......S | |
Retrocopy | KGTNAEDCLV*KVTQNKCYIGVTVDCDPTVTLSEESGRSLEFLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |