RetrogeneDB ID: | retro_fcat_523 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:32212015..32212602(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000022753 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.76 % |
Parental protein coverage: | 98.49 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | GKQKK-ARKYATMKRMLSLRDQRLKEKDRLKPKK-KEKKDP-SALKEREVPQHPSCLFFQYNTQLGPPYH |
GKQKK.ARKY.TMK.MLSL.DQRLKE...LKPK..K..K.P...L.EREVPQHPSCLFFQYNTQLG.PYH | |
Retrocopy | GKQKK>ARKYETMKPMLSL*DQRLKE*GILKPKR>KKRKIP>CTLNEREVPQHPSCLFFQYNTQLGSPYH |
Parental | ILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKG |
.LVD.N..NFSIKAK.DL.QSMMDC.Y..CIP..TDCVM.EI..L.QKY.VALRIAKDPRFE.LP.TH.. | |
Retrocopy | ALVDINYTNFSIKAKPDLIQSMMDCPYDNCIPDTTDCVMTEIDQLEQKYPVALRIAKDPRFEQLPGTHIA |
Parental | T-YADDCLVQRVTQHKCYIVATVD-RDLKRRIRKIPGVPIMYISNHRRIKIERMP-DDYGAP |
T.Y.DDCLVQ.VTQHKCYIVATVD..DLK.RI.KIPGVPI.YISNH.....E.MP..DYGAP | |
Retrocopy | T<YVDDCLVQTVTQHKCYIVATVD>PDLK*RIQKIPGVPIIYISNH-SYNMEWMP<NDYGAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .33 RPM |
SRP017611_liver | 0 .00 RPM | 9 .91 RPM |