Parental gene:

Fcf1, ENSRNOG00000004723

Aliases:Fcf1, RGD1310899
Description:rRNA-processing protein FCF1 homolog [Source:RefSeq peptide;Acc:NP_001037700]
Organism:Rat (Rattus norvegicus)
Coordinates:6:116748858..116760725(-)


>ENSRNOG00000004723
ATGGGGAAGCAAAAGAAAACAAGGAAATATGCGACTATGAAGCGAATGCTTAGTCTAAGAGATGAGCGACTTAAAGAAAA
GGATAGGTTGAAGCCTAAAAAGAAAGAAAAGAAAGATCCTAGTGCGCTGAAGGAAAGAGAAGTCCCCCAGCATCCTTCCT
GCTTGTTCTTCCAGTATAATACACAGCTGGGTCCACCTTACCACATCCTGGTGGATACCAACTTCATCAACTTTTCCATT
AAAGCCAAACTGGACTTAGTGCAGTCAATGATGGACTGTCTGTACGCCAAGTGTATCCCTTGTATAACCGATTGTGTAAT
GGCTGAAATTGAGAAATTAGGACAGAAGTATCGTGTGGCACTAAGAATCGCCAAAGATCCCCGATTTGACCGATTGCCAT
GCACACACAAAGGAACCTATGCCGATGACTGCCTGGTGCAGAGGGTAACTCAGCACAAGTGTTACATTGTGGCCACAGTT
GACCGTGACCTCAAACGAAGAATCCGGAAGATCCCTGGTGTCCCAATCATGTACCTTTCTAACCACAGATACAACATCGA
GCGGATGCCAGATGATTATGGAGCCCCTCGCTTCTAA

Library Parental gene expression (RPM)
SRP017611_brain 13 .01 RPM
SRP017611_kidney 21 .77 RPM
SRP017611_liver 11 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018296 ortholog_one2many 7 retrogenes
retro_amel_1447, retro_amel_1574, retro_amel_435, retro_amel_458, retro_amel_481, retro_amel_526, retro_amel_932,
Bos taurus ENSBTAG00000020381 ortholog_one2one 1 retrogene
retro_btau_446,
Canis familiaris ENSCAFG00000016971 ortholog_one2many 3 retrogenes
retro_cfam_142, retro_cfam_205, retro_cfam_95,
Callithrix jacchus ENSCJAG00000020518 ortholog_one2one 9 retrogenes
retro_cjac_1432, retro_cjac_1615, retro_cjac_1711, retro_cjac_1926, retro_cjac_2158, retro_cjac_3094, retro_cjac_3125, retro_cjac_4092, retro_cjac_4148,
Cavia porcellus ENSCPOG00000001149 ortholog_one2many 6 retrogenes
retro_cpor_1205, retro_cpor_212, retro_cpor_336, retro_cpor_351, retro_cpor_51, retro_cpor_634,
Equus caballus ENSECAG00000008261 ortholog_one2one 1 retrogene
retro_ecab_423,
Erinaceus europaeus ENSEEUG00000007173 ortholog_one2one 1 retrogene
retro_eeur_491,
Felis catus ENSFCAG00000022753 ortholog_one2many 3 retrogenes
retro_fcat_1461, retro_fcat_523, retro_fcat_685,
Homo sapiens ENSG00000119616 ortholog_one2one 6 retrogenes
retro_hsap_2686, retro_hsap_3040, retro_hsap_383, retro_hsap_3912, retro_hsap_4724, retro_hsap_535,
Gorilla gorilla ENSGGOG00000016318 ortholog_one2many 3 retrogenes
retro_ggor_1872, retro_ggor_2507, retro_ggor_3080,
Latimeria chalumnae ENSLACG00000018879 ortholog_one2many 1 retrogene
retro_lcha_9,
Loxodonta africana ENSLAFG00000000724 ortholog_one2many 1 retrogene
retro_lafr_81,
Microcebus murinus ENSMICG00000006061 ortholog_one2one 5 retrogenes
retro_mmur_1175, retro_mmur_832, retro_mmur_86, retro_mmur_906, retro_mmur_968,
Macaca mulatta ENSMMUG00000008887 ortholog_one2one 8 retrogenes
retro_mmul_1306, retro_mmul_1422, retro_mmul_1704, retro_mmul_1737, retro_mmul_1891, retro_mmul_459, retro_mmul_492, retro_mmul_685,
Monodelphis domestica ENSMODG00000006179 ortholog_one2one 5 retrogenes
retro_mdom_1729, retro_mdom_622, retro_mdom_635, retro_mdom_820, retro_mdom_846,
Mustela putorius furo ENSMPUG00000009321 ortholog_one2one 7 retrogenes
retro_mputfur_1002, retro_mputfur_1131, retro_mputfur_1306, retro_mputfur_1315, retro_mputfur_1621, retro_mputfur_532, retro_mputfur_891,
Mus musculus ENSMUSG00000021243 ortholog_one2one 3 retrogenes
retro_mmus_1575, retro_mmus_2358, retro_mmus_3268,
Nomascus leucogenys ENSNLEG00000016311 ortholog_one2one 7 retrogenes
retro_nleu_1145, retro_nleu_1185, retro_nleu_1789, retro_nleu_1927, retro_nleu_1994, retro_nleu_686, retro_nleu_874,
Oryctolagus cuniculus ENSOCUG00000014120 ortholog_one2many 1 retrogene
retro_ocun_96,
Otolemur garnettii ENSOGAG00000002711 ortholog_one2many 19 retrogenes
retro_ogar_1007, retro_ogar_1114, retro_ogar_1666, retro_ogar_1955, retro_ogar_2035, retro_ogar_2167, retro_ogar_2240, retro_ogar_2336, retro_ogar_2482, retro_ogar_2939, retro_ogar_3232, retro_ogar_3432, retro_ogar_3486, retro_ogar_3488, retro_ogar_503, retro_ogar_651, retro_ogar_739, retro_ogar_79, retro_ogar_972,
Pongo abelii ENSPPYG00000005991 ortholog_one2one 10 retrogenes
retro_pabe_1758, retro_pabe_214, retro_pabe_2295, retro_pabe_2437, retro_pabe_2613, retro_pabe_2685, retro_pabe_3188, retro_pabe_326, retro_pabe_3668, retro_pabe_3830,
Pan troglodytes ENSPTRG00000006540 ortholog_one2one 6 retrogenes
retro_ptro_1813, retro_ptro_1998, retro_ptro_2660, retro_ptro_297, retro_ptro_3142, retro_ptro_401,
Pteropus vampyrus ENSPVAG00000000657 ortholog_one2one 3 retrogenes
retro_pvam_1169, retro_pvam_1272, retro_pvam_454,
Sorex araneus ENSSARG00000003270 ortholog_one2one 3 retrogenes
retro_sara_126, retro_sara_177, retro_sara_375,
Ictidomys tridecemlineatus ENSSTOG00000008083 ortholog_one2one 4 retrogenes
retro_itri_1149, retro_itri_297, retro_itri_599, retro_itri_850,
Tupaia belangeri ENSTBEG00000013557 ortholog_one2one 30 retrogenes
retro_tbel_1190, retro_tbel_1261, retro_tbel_135, retro_tbel_1397, retro_tbel_1457, retro_tbel_1576, retro_tbel_182, retro_tbel_222, retro_tbel_2578, retro_tbel_2996, retro_tbel_3037, retro_tbel_3060, retro_tbel_3075, retro_tbel_3105, retro_tbel_3152, retro_tbel_3360, retro_tbel_342, retro_tbel_3564, retro_tbel_3568, retro_tbel_3661, retro_tbel_3694, retro_tbel_3797, retro_tbel_3923, retro_tbel_4463, retro_tbel_4506, retro_tbel_4571, retro_tbel_4645, retro_tbel_580, retro_tbel_776, retro_tbel_966,
Tarsius syrichta ENSTSYG00000006327 ortholog_one2one 3 retrogenes
retro_tsyr_1016, retro_tsyr_1418, retro_tsyr_621,
Tursiops truncatus ENSTTRG00000002440 ortholog_one2one 3 retrogenes
retro_ttru_1447, retro_ttru_1691, retro_ttru_584,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_771 75.88 98.99
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2. retro_rnor_818 91.04 100.00
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3. retro_rnor_2539 59.43 53.03
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4. retro_rnor_2591 74.67 75.25
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5. retro_rnor_2658 65.14 53.03
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Download FASTA sequences of all ENSRNOG00000004723 retrocopies