RetrogeneDB ID: | retro_cpor_351 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_13:27818615..27819009(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000001149 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.92 % |
Parental protein coverage: | 67.01 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | PSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAE |
PSALKER.VPQHPSCLFFQYNT.LGPPYHILVDT.F.N..IKA.LD..QSMMD.L.AKC.PC.TDCV.AE | |
Retrocopy | PSALKER*VPQHPSCLFFQYNTRLGPPYHILVDTKFMNSFIKARLDIGQSMMDWLCAKCVPCVTDCVKAE |
Parental | IEKLGQKYRVALRIAKDPRFERLPCTH-KGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKI |
.E.L.QKY.VAL..AKDP.FE...CTH.KGT...D......TQH.CYIV.....D.K.RI..I | |
Retrocopy | TEELSQKYPVALLMAKDPCFE*RLCTH>KGTCTADWECRE-TQHRCYIVVVIYWDFK*RILEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .22 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .69 RPM |
SRP017611_liver | 0 .00 RPM | 16 .63 RPM |
SRP040447_lung | 0 .00 RPM | 19 .55 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 9 .60 RPM |