RetrogeneDB ID: | retro_fcat_1461 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:87531241..87531826(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000022753 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.4 % |
Parental protein coverage: | 99.5 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | GKQKKARKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILV |
GKQKKARKYATMK.MLSLR.QRLKEKDRLKPKKKEKKDPSAL.EREVP.HPSCLFFQYNTQLGPPYHILV | |
Retrocopy | GKQKKARKYATMK*MLSLRNQRLKEKDRLKPKKKEKKDPSALREREVPRHPSCLFFQYNTQLGPPYHILV |
Parental | DTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYA |
DTNFINFSIKAKLDLVQS.MDCLYAKCIPCITDCVMAE.EKLG.K...ALRIAK.PRFE.LPCTHKGTYA | |
Retrocopy | DTNFINFSIKAKLDLVQSVMDCLYAKCIPCITDCVMAETEKLG*K--LALRIAKGPRFE*LPCTHKGTYA |
Parental | DDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRRIKIERMPDDYGAPRF |
DDCLVQRVTQHKCYIVATVD.DLK.RIRKIPGVPIMYISNH.R..IE.MPDDYGAP.F | |
Retrocopy | DDCLVQRVTQHKCYIVATVDWDLK*RIRKIPGVPIMYISNH-RYNIEQMPDDYGAPWF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .26 RPM | 6 .89 RPM |
SRP017611_kidney | 1 .13 RPM | 14 .33 RPM |
SRP017611_liver | 0 .71 RPM | 9 .91 RPM |