Parental gene:

ENSLACG00000018879

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126565.1:5088762..5101975(+)


>ENSLACG00000018879
AATTGCTTGCATGATACAATCTCTGTAAGTTTTAGGGAAATCGATGCTTGTTTTTACCCACAGGGGAAACAAAAGAAGAC
CAGAAAATATGCCACCATGAAACGAATGATTAACCTACGGGATCAGAGGATTAAAGAAAAGGACAGACAAAAGCCCAAGG
AGAAGAAAAAGGATGATCCTAGTGCAATCAAAGAGAGGGAAGTCCTCAAACACCCCTCCTGTCTGTTTTTTCAGTATAAC
ACACAACTTGGTCCTCCTTATTATATTTTGGTTGACACTAACTTCATCAACTTTTCCATCAAAGCCAAACTGGACATCGT
ACAGTCCATGATGGATTGTCTGTATGCAAAATGTATTCCATGCATCACTGATTGTGTAATGGCTGAAATTGAAAAACTGG
GACAAAAGTACAGAGTCGCTCTCCGGATTGCTAAAGACCCACGTTTTGAACGCTTGCCGTGCACGCACAAAGGGACATAT
GCTGACGACTGCTTAGTTCAGAGAGTCACACAGCATAAATGTTACATTGTTGCCACAGTGGACAGAGACCTGAAGAGGAG
AATTAGAAAAATTCCTGGTGTTCCCATCATGTACATTTCCAATCACAGATACAACATTGAAAGAATGCCGGATGACTATG
GTGCTCCAAGA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 4 .58 RPM
DRP000627_kidney 1 .36 RPM
DRP000627_pelvic_fin 6 .69 RPM
DRP000627_pharynx 1 .05 RPM
DRP000627_gill 1 .23 RPM
DRP000627_tail_muscle 1 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018296 ortholog_many2many 7 retrogenes
Bos taurus ENSBTAG00000020381 ortholog_one2many 1 retrogene
Canis familiaris ENSCAFG00000016971 ortholog_many2many 3 retrogenes
Callithrix jacchus ENSCJAG00000020518 ortholog_one2many 9 retrogenes
Cavia porcellus ENSCPOG00000001149 ortholog_many2many 6 retrogenes
Equus caballus ENSECAG00000008261 ortholog_one2many 1 retrogene
Erinaceus europaeus ENSEEUG00000007173 ortholog_one2many 1 retrogene
Felis catus ENSFCAG00000022753 ortholog_many2many 3 retrogenes
Homo sapiens ENSG00000119616 ortholog_one2many 6 retrogenes
Gorilla gorilla ENSGGOG00000016318 ortholog_many2many 3 retrogenes
Loxodonta africana ENSLAFG00000000724 ortholog_many2many 1 retrogene
Microcebus murinus ENSMICG00000006061 ortholog_one2many 5 retrogenes
Macaca mulatta ENSMMUG00000008887 ortholog_one2many 8 retrogenes
Monodelphis domestica ENSMODG00000006179 ortholog_one2many 5 retrogenes
Mustela putorius furo ENSMPUG00000009321 ortholog_one2many 7 retrogenes
Mus musculus ENSMUSG00000021243 ortholog_one2many 3 retrogenes
Nomascus leucogenys ENSNLEG00000016311 ortholog_one2many 7 retrogenes
Oryctolagus cuniculus ENSOCUG00000014120 ortholog_many2many 1 retrogene
Otolemur garnettii ENSOGAG00000002711 ortholog_many2many 19 retrogenes
Pongo abelii ENSPPYG00000005991 ortholog_one2many 10 retrogenes
Pan troglodytes ENSPTRG00000006540 ortholog_one2many 6 retrogenes
Pteropus vampyrus ENSPVAG00000000657 ortholog_one2many 3 retrogenes
Rattus norvegicus ENSRNOG00000004723 ortholog_one2many 5 retrogenes
Sorex araneus ENSSARG00000003270 ortholog_one2many 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000008083 ortholog_one2many 4 retrogenes
Tupaia belangeri ENSTBEG00000013557 ortholog_one2many 30 retrogenes
Tarsius syrichta ENSTSYG00000006327 ortholog_one2many 3 retrogenes
Tursiops truncatus ENSTTRG00000002440 ortholog_one2many 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_9 99.49 90.32
Please wait, loading
Please wait, loading
Please wait, loading

Download FASTA sequences of all ENSLACG00000018879 retrocopies