RetrogeneDB ID: | retro_mmul_685 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214546109:178..480(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSMMUG00000008887 | ||
Aliases: | None | ||
Description: | rRNA-processing protein FCF1 homolog [Source:RefSeq peptide;Acc:NP_001248471] |
Percent Identity: | 73.53 % |
Parental protein coverage: | 51.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITD |
KEKK.PS.LKER.VPQ.PSCLFFQY.TQLG..YHIL.D....NFSI.AKLD..QS.M.CLYA.CIPCIT. | |
Retrocopy | KEKKYPSMLKERKVPQYPSCLFFQYITQLGLLYHILFDSSVTNFSIRAKLDILQSVMNCLYARCIPCITH |
Parental | CVMAEI-EKLGQKYRVALRIAKDPRFERLPCT |
CVMAE..EK.GQKY.VA.RI.KDP.FERLP.T | |
Retrocopy | CVMAEL<EKMGQKYQVA*RITKDPKFERLPNT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .67 RPM | 4 .48 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 3 .89 RPM |
SRP007412_cerebellum | 1 .87 RPM | 3 .42 RPM |
SRP007412_heart | 0 .77 RPM | 3 .12 RPM |
SRP007412_kidney | 1 .64 RPM | 6 .10 RPM |
SRP007412_liver | 0 .28 RPM | 2 .45 RPM |
SRP007412_testis | 0 .19 RPM | 8 .71 RPM |