RetrogeneDB ID: | retro_rnor_2539 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:112287146..112287456(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fcf1 | ||
Ensembl ID: | ENSRNOG00000004723 | ||
Aliases: | Fcf1, RGD1310899 | ||
Description: | rRNA-processing protein FCF1 homolog [Source:RefSeq peptide;Acc:NP_001037700] |
Percent Identity: | 59.43 % |
Parental protein coverage: | 53.03 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | GKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILV |
GK.K.T.K..TM..ML..R..RLKEKDR...K......PS..KE.E.P.HPS.......T.LGPPYHIL. | |
Retrocopy | GKRKETSK*VTM*LMLIFRGIRLKEKDRW--KLXXXXXPSIVKEGEAPHHPSYVSL*CDTKLGPPYHILI |
Parental | DT-NFINFSIKAKLDLVQSMMDCLYAKCIPCITDCV |
D..NFI.FSIK.K.DLVQS..DCLY.K.IPCITDCV | |
Retrocopy | DS>NFISFSIKDKKDLVQSVTDCLYSKYIPCITDCV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .77 RPM |
SRP017611_liver | 0 .00 RPM | 11 .90 RPM |