RetrogeneDB ID: | retro_mmus_3268 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:40164371..40164956(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fcf1 | ||
Ensembl ID: | ENSMUSG00000021243 | ||
Aliases: | Fcf1, 1110008B24Rik | ||
Description: | FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1920986] |
Percent Identity: | 85.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHIL |
MGKQKKTRKYATMK.MLSLR.ERLKEKDRLKPK...KKD...LKERE.PQHPSCLFFQYNTQLGPPYHIL | |
Retrocopy | MGKQKKTRKYATMK*MLSLRVERLKEKDRLKPK---KKDRGTLKEREFPQHPSCLFFQYNTQLGPPYHIL |
Parental | VDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVALRIAKDPRFDRLPCTHKGTY |
V.TNFINFSIKAKLDLV.SMMDC.YAKCIPCITDC.MAE.EKLGQK..VALRIAKDPRFDRLPCTHKGTY | |
Retrocopy | VGTNFINFSIKAKLDLV*SMMDCVYAKCIPCITDCGMAETEKLGQKCLVALRIAKDPRFDRLPCTHKGTY |
Parental | ADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLSNHRYNIERMPDDYGAPRF |
.DDCLVQ.VTQHKCYIVAT.D..LK.RIRKIPG.PIMY..NHRYNI.RMPDDYG.P.F | |
Retrocopy | TDDCLVQKVTQHKCYIVATADCHLKQRIRKIPGIPIMYIFNHRYNIKRMPDDYGVPHF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 7 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 10 .29 RPM |
SRP007412_heart | 0 .03 RPM | 9 .31 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .88 RPM |
SRP007412_liver | 0 .00 RPM | 10 .08 RPM |
SRP007412_testis | 0 .00 RPM | 14 .45 RPM |