RetrogeneDB ID: | retro_tsyr_1418 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_43366:12897..13347(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSTSYG00000006327 | ||
Aliases: | None | ||
Description: | FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220] |
Percent Identity: | 90. % |
Parental protein coverage: | 75.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | PQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYR |
PQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQ.YR | |
Retrocopy | PQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQ*YR |
Parental | VALRIAKDPRFERLPCTHKGTYADDCLVQRVTQXXXXXXXXXDRD--RRIRKIPGVPIMYISNHRYNIER |
VALRIAKDPRFERLPCTHKGTYADD.LVQRVTQ.........D.D..RRIRKIPGVPIMYISNHRYNIER | |
Retrocopy | VALRIAKDPRFERLPCTHKGTYADDSLVQRVTQHKCYIVATVDQDLKRRIRKIPGVPIMYISNHRYNIER |
Parental | MPDDYGAPRF |
MPDDY.APRF | |
Retrocopy | MPDDYRAPRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |