RetrogeneDB - Parental gene ENSCJAG00000020518 details

                            
>ENSCJAG00000020518
AAGGGGAAGCAAAAGAAAACAAGGAAGTATGCGACCATGAAGCGAATGCTTAGTCTCAGAGATCAGAGGCTTAAAGAAAA

GGATAGATTAAAACCTAAAAAGAAAGAAAAGAAGGATCCCAGCGCGTTAAAGGAAAGAGAAGTTCCTCAACATCCTTCCT

GCTTATTTTTCCAATATAATACACAGTTGGGCCCACCTTACCACATCCTTGTTGATACCAACTTTATCAACTTTTCCATA

AAAGCCAAACTGGACTTAGTGCAGTCAATGATGGACTGTCTGTATGCCAAGTGTATCCCTTGTATAACTGATTGTGTAAT

GGCTGAAATTGAAAAATTGGGGCAGAAGTATCGAGTGGCTCTAAGGATTGCCAAGGATCCAAGATTTGAACGATTACCGT

GTACACACAAAGGAACCTACGCAGATGACTGCTTAGTACAGAGAGTAACTCAGCATAAGTGTTACATTGTGGCCACAGTT

GACCGGGACCTTAAAAGAAGAATTCGTAAGATTCCTGGAGTTCCTATCATGTACATTTCTAACCATAGGTACAACATTGA

ACGGATGCCAGATGATTATGGAGCCCCTCGATTCTAA

Library	Parental gene expression (RPM)
SRP051959_colon	3 .31 RPM
SRP051959_heart	3 .16 RPM
SRP051959_kidney	4 .99 RPM
SRP051959_liver	4 .25 RPM
SRP051959_lung	5 .45 RPM
SRP051959_lymph_node	5 .89 RPM
SRP051959_skeletal_muscle	3 .30 RPM
SRP051959_spleen	6 .24 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000018296	ortholog_one2many	7 retrogenes	retro_amel_1447, retro_amel_1574, retro_amel_435, retro_amel_458, retro_amel_481, retro_amel_526, retro_amel_932,
Bos taurus	ENSBTAG00000020381	ortholog_one2one	1 retrogene	retro_btau_446,
Canis familiaris	ENSCAFG00000016971	ortholog_one2many	3 retrogenes	retro_cfam_142, retro_cfam_205, retro_cfam_95,
Cavia porcellus	ENSCPOG00000001149	ortholog_one2many	6 retrogenes	retro_cpor_1205, retro_cpor_212, retro_cpor_336, retro_cpor_351, retro_cpor_51, retro_cpor_634,
Equus caballus	ENSECAG00000008261	ortholog_one2one	1 retrogene	retro_ecab_423,
Erinaceus europaeus	ENSEEUG00000007173	ortholog_one2one	1 retrogene	retro_eeur_491,
Felis catus	ENSFCAG00000022753	ortholog_one2many	3 retrogenes	retro_fcat_1461, retro_fcat_523, retro_fcat_685,
Homo sapiens	ENSG00000119616	ortholog_one2one	6 retrogenes	retro_hsap_2686, retro_hsap_3040, retro_hsap_383, retro_hsap_3912, retro_hsap_4724, retro_hsap_535,
Gorilla gorilla	ENSGGOG00000016318	ortholog_one2many	3 retrogenes	retro_ggor_1872, retro_ggor_2507, retro_ggor_3080,
Latimeria chalumnae	ENSLACG00000018879	ortholog_one2many	1 retrogene	retro_lcha_9,
Loxodonta africana	ENSLAFG00000000724	ortholog_one2many	1 retrogene	retro_lafr_81,
Microcebus murinus	ENSMICG00000006061	ortholog_one2one	5 retrogenes	retro_mmur_1175, retro_mmur_832, retro_mmur_86, retro_mmur_906, retro_mmur_968,
Macaca mulatta	ENSMMUG00000008887	ortholog_one2one	8 retrogenes	retro_mmul_1306, retro_mmul_1422, retro_mmul_1704, retro_mmul_1737, retro_mmul_1891, retro_mmul_459, retro_mmul_492, retro_mmul_685,
Monodelphis domestica	ENSMODG00000006179	ortholog_one2one	5 retrogenes	retro_mdom_1729, retro_mdom_622, retro_mdom_635, retro_mdom_820, retro_mdom_846,
Mustela putorius furo	ENSMPUG00000009321	ortholog_one2one	7 retrogenes	retro_mputfur_1002, retro_mputfur_1131, retro_mputfur_1306, retro_mputfur_1315, retro_mputfur_1621, retro_mputfur_532, retro_mputfur_891,
Mus musculus	ENSMUSG00000021243	ortholog_one2one	3 retrogenes	retro_mmus_1575, retro_mmus_2358, retro_mmus_3268,
Nomascus leucogenys	ENSNLEG00000016311	ortholog_one2one	7 retrogenes	retro_nleu_1145, retro_nleu_1185, retro_nleu_1789, retro_nleu_1927, retro_nleu_1994, retro_nleu_686, retro_nleu_874,
Oryctolagus cuniculus	ENSOCUG00000014120	ortholog_one2many	1 retrogene	retro_ocun_96,
Otolemur garnettii	ENSOGAG00000002711	ortholog_one2many	19 retrogenes	retro_ogar_1007, retro_ogar_1114, retro_ogar_1666, retro_ogar_1955, retro_ogar_2035, retro_ogar_2167, retro_ogar_2240, retro_ogar_2336, retro_ogar_2482, retro_ogar_2939, retro_ogar_3232, retro_ogar_3432, retro_ogar_3486, retro_ogar_3488, retro_ogar_503, retro_ogar_651, retro_ogar_739, retro_ogar_79, retro_ogar_972,
Pongo abelii	ENSPPYG00000005991	ortholog_one2one	10 retrogenes	retro_pabe_1758, retro_pabe_214, retro_pabe_2295, retro_pabe_2437, retro_pabe_2613, retro_pabe_2685, retro_pabe_3188, retro_pabe_326, retro_pabe_3668, retro_pabe_3830,
Pan troglodytes	ENSPTRG00000006540	ortholog_one2one	6 retrogenes	retro_ptro_1813, retro_ptro_1998, retro_ptro_2660, retro_ptro_297, retro_ptro_3142, retro_ptro_401,
Pteropus vampyrus	ENSPVAG00000000657	ortholog_one2one	3 retrogenes	retro_pvam_1169, retro_pvam_1272, retro_pvam_454,
Rattus norvegicus	ENSRNOG00000004723	ortholog_one2one	5 retrogenes	retro_rnor_2539, retro_rnor_2591, retro_rnor_2658, retro_rnor_771, retro_rnor_818,
Sorex araneus	ENSSARG00000003270	ortholog_one2one	3 retrogenes	retro_sara_126, retro_sara_177, retro_sara_375,
Ictidomys tridecemlineatus	ENSSTOG00000008083	ortholog_one2one	4 retrogenes	retro_itri_1149, retro_itri_297, retro_itri_599, retro_itri_850,
Tupaia belangeri	ENSTBEG00000013557	ortholog_one2one	30 retrogenes	retro_tbel_1190, retro_tbel_1261, retro_tbel_135, retro_tbel_1397, retro_tbel_1457, retro_tbel_1576, retro_tbel_182, retro_tbel_222, retro_tbel_2578, retro_tbel_2996, retro_tbel_3037, retro_tbel_3060, retro_tbel_3075, retro_tbel_3105, retro_tbel_3152, retro_tbel_3360, retro_tbel_342, retro_tbel_3564, retro_tbel_3568, retro_tbel_3661, retro_tbel_3694, retro_tbel_3797, retro_tbel_3923, retro_tbel_4463, retro_tbel_4506, retro_tbel_4571, retro_tbel_4645, retro_tbel_580, retro_tbel_776, retro_tbel_966,
Tarsius syrichta	ENSTSYG00000006327	ortholog_one2one	3 retrogenes	retro_tsyr_1016, retro_tsyr_1418, retro_tsyr_621,
Tursiops truncatus	ENSTTRG00000002440	ortholog_one2one	3 retrogenes	retro_ttru_1447, retro_ttru_1691, retro_ttru_584,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_1432	71.19	89.39	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_1615	68.59	77.27	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_1711	84.77	98.99	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_1926	71.93	85.86	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_2158	75.93	53.54	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_3094	77.39	98.99	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_3125	79.50	99.49	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cjac_4092	67.96	51.52	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cjac_4148	80.00	99.49	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000020518 retrocopies

Parental gene:	FCF1, ENSCJAG00000020518
Aliases:	None
Description:	FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220]
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	10:99983537..99999896(+)

Parental gene:

FCF1, ENSCJAG00000020518