RetrogeneDB ID: | retro_mmul_1422 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:26990164..26990456(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FCF1 | ||
Ensembl ID: | ENSMMUG00000008887 | ||
Aliases: | None | ||
Description: | rRNA-processing protein FCF1 homolog [Source:RefSeq peptide;Acc:NP_001248471] |
Percent Identity: | 71.15 % |
Parental protein coverage: | 51.78 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | GKQKKTRKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQ-LGPPYHIL |
G..K..RKY.TMK.MLSLRDQRLKE.DRLKPKKKEK..P..LK.R.VPQHPS.LFFQYNT..L.PPYHIL | |
Retrocopy | GEAKLNRKYVTMK*MLSLRDQRLKE*DRLKPKKKEK*YPGMLKKRKVPQHPSWLFFQYNTR<LSPPYHIL |
Parental | VDTNFINFSIKAKLDLVQSMMDCLYAK-CIPCIT |
.DT.FINFSIK.....V.SM.DCLY....IPCIT | |
Retrocopy | FDTSFINFSIK----IV*SMLDCLYTR<SIPCIT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 4 .48 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .42 RPM |
SRP007412_heart | 0 .00 RPM | 3 .12 RPM |
SRP007412_kidney | 0 .00 RPM | 6 .10 RPM |
SRP007412_liver | 0 .00 RPM | 2 .45 RPM |
SRP007412_testis | 0 .04 RPM | 8 .71 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2686 |
Pan troglodytes | retro_ptro_1813 |
Pongo abelii | retro_pabe_2295 |
Callithrix jacchus | retro_cjac_1432 |