RetrogeneDB ID: | retro_sara_107 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_3192:12893..13235(+) | ||
Located in intron of: | ENSSARG00000008090 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 63.79 % |
Parental protein coverage: | 83.58 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VVPLATYM-RIYKKGDIVDIKGMGTVQKGMPHKCY-HGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIHA |
VVPLATYM....KKGDIVDIKGMGTVQ..MPHKCY..GKT.RVY..TQHAVGIV.NKQ.KGKIL.KRI.. | |
Retrocopy | VVPLATYM>SLFKKGDIVDIKGMGTVQREMPHKCY<SGKTRRVYSITQHAVGIVINKQGKGKILTKRINV |
Parental | PRENIKHSENDN--LLQVKENDQRKKEAKEKGTWVRLERQPTSLRE |
....IKHS......L..V.EN...KKE..E..TWV.L..QP...RE | |
Retrocopy | HNKHIKHSNSRHSFLRWVRENN*KKKETEEEETWVQLQCQPAPPRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |