RetrogeneDB ID: | retro_sara_426 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_201805:7602..8011(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 74.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHG-KTGRVYNVTQHAVGIVVNKQVKGKILAKRIHAP |
VVPLATYMRI.KK.DI.DIKGMGTVQKGMPHKCYH..KTGRVYNVTQHAVGIVVNKQVKGKILAKRI... | |
Retrocopy | VVPLATYMRICKKSDIIDIKGMGTVQKGMPHKCYHA<KTGRVYNVTQHAVGIVVNKQVKGKILAKRINVR |
Parental | RENIKHSENDN--LLQVKE-NDQRKKEAKEKGTWVRLERQPTSLRETHFVRTSGKEPDQLEASP-EFMS |
.E.IKHS......L.QVKE.NDQ..KEAKEKGTWV.L..QP...RE.HFVRT.GKE...LE..P.EFM. | |
Retrocopy | IEHIKHSKGRDSFLKQVKE<NDQKQKEAKEKGTWVQLKHQPAPPREAHFVRTNGKELERLEPIPNEFMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |