RetrogeneDB ID: | retro_sara_261 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_13511:1540..1948(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 72.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | VVPLATYMRIYKKGDIVDI-KGMGTVQKGMPHKCYHGKTGR-VYNVTQHAVGIVVNKQVKGKILAKRIHA |
VVPLATYM.IYKKGD.VDI.KGMGTVQKGMPHKCYHGKTG..VY.VTQ.AVGIVV.KQVKGKILAKRI.. | |
Retrocopy | VVPLATYMCIYKKGDNVDI<KGMGTVQKGMPHKCYHGKTGK<VYSVTQDAVGIVVYKQVKGKILAKRINV |
Parental | PRENIKHSENDN--LLQVKENDQRK-KEAKEKGTW-VRLERQPT-SLRETHFVRTSGKEPDQLEASP-EF |
..E.IKHS......L..VKENDQ...KEAKEKGTW.V.L.RQP..S.RE.HF.RT.GKEP..LE..P.EF | |
Retrocopy | HTEHIKHSKSRDSFLKRVKENDQKR>KEAKEKGTW<VQLKRQPA<STREAHFGRTNGKEPERLEPIPYEF |
Parental | MS |
M. | |
Retrocopy | MA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |