RetrogeneDB ID: | retro_sara_519 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_229903:5948..6343(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 75.94 % |
Parental protein coverage: | 97.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGR-VYNVTQHAVGIVVNKQVKGKILAKRIHAP |
VVPLATYM.IYKK.DIVDIKGM.TVQKGMPHKCYHGKTGR...NVTQHAVGIVVNKQVKGKILAKRI... | |
Retrocopy | VVPLATYMCIYKKDDIVDIKGMDTVQKGMPHKCYHGKTGR>KNNVTQHAVGIVVNKQVKGKILAKRINVR |
Parental | RENIKHS-ENDNLLQVKE-NDQRKKEAKEKGTWVRLERQPTSLRETHFVRTSGKEPDQLEASP |
.E.IKHS.E...L....E..DQ.KKEAKEKGTWV.L.RQP...RETHF.RT.GKEPD.LE..P | |
Retrocopy | IEHIKHS>ESRQLPEMGEGSDQKKKEAKEKGTWVQLKRQPALPRETHFIRTNGKEPDRLEPIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |