RetrogeneDB ID: | retro_sara_502 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_228773:41943..42354(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 78.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIHAPR |
VVPLATYMRIYKKGDIVD.KGMGTVQKGMPHKCYHGKTGRVYN.TQHAVGIV.NKQVKGKIL.KRI.... | |
Retrocopy | VVPLATYMRIYKKGDIVDVKGMGTVQKGMPHKCYHGKTGRVYNITQHAVGIVINKQVKGKILPKRINVRI |
Parental | ENIKHSEN-DNLL-QVKENDQRKKEAKEKGTWVRLERQPTSLRETHFVRTSGKEPDQLEASP-EFMS |
E.IKHS...D..L..VKENDQ.KKEAKEKGTWV.L.RQP...RE.HFVRT.GKEP..LE..P.EFM. | |
Retrocopy | EHIKHSKS*DSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |