RetrogeneDB ID: | retro_sara_112 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_3402:116451..116864(-) | ||
Located in intron of: | ENSSARG00000008647 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 61.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VVPLATYMRIYKKGDIVDIKGMGTVQKGM---PHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIH |
VVPLA.YM.IYKKGD.VD.KG.GT.QK.M...P..CYHGKTGRVY.VTQHA.G.VVNK.VKGKILA..I. | |
Retrocopy | VVPLAIYMWIYKKGDTVDRKGIGTIQKAMPPPPKNCYHGKTGRVYKVTQHAPGAVVNKHVKGKILAQGIN |
Parental | APRENIKHSE-NDNLLQ-VKENDQRKKEAKEKGTWVRLERQPTSLRETHFVRTSGKEPDQL-EASPEFMS |
...E..KHSE..D..L..VKE..QRKKEAKEKGT...L...P....E....RTSGKEP..L.....EFM. | |
Retrocopy | VRIEYTKHSERRDSFLKWVKEKGQRKKEAKEKGTCIQL-KLPAAPPEKLTLRTSGKEPELL<RTASEFMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |