RetrogeneDB ID: | retro_sara_562 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_233795:35007..35418(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 74.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIHAPR |
VVPLATYMR.YKKGDIVD.KGMGTVQKGMPHKCYHGKTGRVYNVTQH.VGIV.NKQVKGK.LAKRI.... | |
Retrocopy | VVPLATYMRLYKKGDIVDLKGMGTVQKGMPHKCYHGKTGRVYNVTQHTVGIVINKQVKGKFLAKRINVRI |
Parental | ENIKHSEN-DNLLQ-VKENDQRKKEAKEKGTWVRLERQPTSLRETHFVRTSGKEPDQLEASP-EFMS |
E..KHS...D..L..VKENDQ.KK.AKEKGTWV.L.RQP...RE.HFVR...KEP..LE..P.EFM. | |
Retrocopy | EQTKHSKS*DSFLKWVKENDQKKKDAKEKGTWVQLKRQPAPPREAHFVRNNRKEPELLEPIPCEFMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |