RetrogeneDB ID: | retro_sara_286 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_147694:1073..1484(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 64.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIHAPR |
VVPLAT.M..YK.GDI...KGMGTVQK.MPHK.Y...TG.VY.VTQHAVGIV.NK.VKGKILAKR..... | |
Retrocopy | VVPLAT*MHKYKEGDIIYLKGMGTVQKVMPHKWYQSQTGGVYSVTQHAVGIVINKEVKGKILAKRTNVHI |
Parental | ENIKHSENDNLL--QVKENDQRKKEAKEKGTWVRLERQPTSLRETHFVRTSGKEPDQLEASP-EFMS |
E..KHS........QVK.NDQ.KKEA..KGTWV.L..QP...RE.HFVRT.GK.P..LE..P.EFMS | |
Retrocopy | EYSKHSKSRDSFPKQVKKNDQKKKEAN*KGTWVQLKQQPAPPREAHFVRTNGKKPELLEPTP*EFMS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |