RetrogeneDB ID: | retro_sara_159 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_5057:84836..85224(+) | ||
Located in intron of: | ENSSARG00000010892 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 60.77 % |
Parental protein coverage: | 96.27 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | VPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIHAPRE |
VPLA..M.IYK.GDIVDIKGMGTVQK.MPH.C..G..G.VY.VTQHAVGIVVNKQVK.KILAKRI....E | |
Retrocopy | VPLAMFMQIYKDGDIVDIKGMGTVQKRMPHRC*QGRAGWVYSVTQHAVGIVVNKQVKNKILAKRINVHIE |
Parental | -NIKHSENDNLLQVKENDQRKKEAKEKGTWVRLERQPTSLRETHFVRTSGKEPDQLEASP |
..IKHS.....L.........K....K.TWV.L..Q....RE.HFVRTSGKEP...E..P | |
Retrocopy | >FIKHS*ELR*LSETVKENGQKNKEVKETWVQLKCQLAPSREAHFVRTSGKEPELPEPIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |