RetrogeneDB ID: | retro_sara_622 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_242833:3768..4096(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 55.36 % |
Parental protein coverage: | 79.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | VPLATYMRIYKKGDIVDIKGMGTVQKGMP-HKCYHGKTGRVYNV-TQHAVGIVVNKQVKGKILAKRIHAP |
.PLA.Y.....KGD.....GMG.VQKGMP.H...HGKTGRV..V.TQ.AVGI.VN.QVKG..LAKRI... | |
Retrocopy | LPLAMYTWLPEKGDGTVTEGMGIVQKGMP<HRRSHGKTGRVCSV>TQRAVGIIVNRQVKGESLAKRINVC |
Parental | RENIKHSEN-DNLLQ-VKENDQRKKEAKE-KGTWVRLERQPT |
.E.IK.S...D..L..V.EN.Q..K.A.E..GTWV....QPT | |
Retrocopy | VEHIKRSKSPDSFLKWVRENGQKRKKARE>PGTWVQPKHQPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |