RetrogeneDB ID: | retro_sara_406 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_195022:18755..19029(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 80.85 % |
Parental protein coverage: | 67.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVY-NVT-QHAVGIVVNKQVKGKILAKRIHA |
VVPL.TYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVY..VT.QHAVGIVVNKQVKGKILAKRI.. | |
Retrocopy | VVPLVTYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVY<HVT<QHAVGIVVNKQVKGKILAKRINV |
Parental | PRENIKHSENDN--LLQVKENDQR |
..E.IKHS......L..VKENDQ. | |
Retrocopy | RTEHIKHSKSRDSFLKRVKENDQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |