RetrogeneDB ID: | retro_sara_129 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_3943:15220..15626(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 67.15 % |
Parental protein coverage: | 99.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VPLATYMRIYKKGDIVDIKGMGTV-QKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIHAPR |
VPLATYMRIYKKGDIVD.K.MGTV..K..P......K...VY.VTQHAVGIVVNKQVKGKIL.KRI.... | |
Retrocopy | VPLATYMRIYKKGDIVDLKAMGTV>KKECPTNVIMAKL-EVYSVTQHAVGIVVNKQVKGKILFKRINVCF |
Parental | ENIKHSENDN--LLQVKENDQRKKEAKEKGTWVRLERQPTSLRETHFVRTSGKEPDQLEASP-EFMS |
E.IKHS......L..VKENDQ.KKEAKEK.TWV.L.RQP...RE.HFVRT.GKEP..LE..P.EFM. | |
Retrocopy | EHIKHSKSRDSFLKRVKENDQKKKEAKEKRTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |