RetrogeneDB ID: | retro_sara_343 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_172809:6704..7016(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 57.55 % |
Parental protein coverage: | 76.87 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKI-LAKRIHAP |
VVPLAT.M.I..K.DIVDIKGM..VQK.M.HKC.HGK.GR.Y...QHAVG.VV.K..K.K..LAKRI... | |
Retrocopy | VVPLATNMWI*RKDDIVDIKGMDIVQKEMSHKCPHGKAGRIYSLSQHAVGTVVYKPKKTKL<LAKRINVK |
Parental | RENIKHSEN-DNLLQVKENDQRKK-EAKEKGTWVRL |
.E..KHS...D..L.......RKK.E.KEK..WV.L | |
Retrocopy | IEHSKHSKSQDYFLKL*WGMIRKK>ETKEKMIWVQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |