RetrogeneDB ID: | retro_sara_140 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_4308:3987..4383(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 78.79 % |
Parental protein coverage: | 97.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIHAPR |
VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVG.VVNKQVKGKILAKRI.... | |
Retrocopy | VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGSVVNKQVKGKILAKRINVRI |
Parental | ENIKHSENDN--LLQVKENDQRKKEAKEKGTWVRLERQPTSLRETHFVRTSGKEPDQLEASP |
E.IKHS......L..VKENDQ.KKEAKEKGTWV.L.RQP...RE.HFVRT.GKE......SP | |
Retrocopy | EHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTKGKELSCWSPSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |