RetrogeneDB ID: | retro_sara_674 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_256635:6667..6956(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 61.62 % |
Parental protein coverage: | 72.39 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VVPLATYMRI-YKKGDIVDIKGM-GTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIHA |
VVPL.TY.RI..KKGD.VD.KG..GTVQK.MPHK....KTGRVYN.TQHAV.IVVNKQVKGKILAKRI.. | |
Retrocopy | VVPLVTYLRI<LKKGDVVDMKGR<GTVQKRMPHKGNLAKTGRVYNGTQHAVCIVVNKQVKGKILAKRINV |
Parental | PRENIKHSENDNLLQVKENDQRKKEAKEK |
P.E..KHS...............K..K.K | |
Retrocopy | PIEHTKHSQS*DSFRDR*RKMIRKRRKPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |