RetrogeneDB ID: | retro_sara_187 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_629:111490..111813(+) | ||
Located in intron of: | ENSSARG00000005438 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 60.91 % |
Parental protein coverage: | 79.85 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKIL-AKRIHAP |
VVPLATYM.I.KK.D.V..KGMGTVQKGMP.....GKTG.VYN.TQH..GIVVNK......L.AKR.... | |
Retrocopy | VVPLATYMQISKKSDLVNMKGMGTVQKGMPTSIDRGKTGKVYNGTQHTFGIVVNKS-RARFL<AKRVNLH |
Parental | RENIKHSENDNLLQ--VKENDQRKKEAKEKGTWVRLERQP |
.E.IKHS...N..Q..V.ENDQ.KK.AKEKGTWV.....P | |
Retrocopy | IEHIKHSKSRNSFQKRVQENDQ*KKKAKEKGTWVQQKCRP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |