RetrogeneDB ID: | retro_sara_46 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_1153:724563..724971(+) | ||
Located in intron of: | ENSSARG00000003251 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 69.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VVPLATYMRIYKKGDIVDIKG-MGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIHAP |
VVPLATY..IY.KGDI.DIKG.MGTVQKGM.HKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRI... | |
Retrocopy | VVPLATYIHIYQKGDIIDIKG<MGTVQKGMRHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVR |
Parental | RENIKH-SENDNLLQ-VKENDQRKKEAKEKGTWVRLERQPTSLRETHFVRTSGKEPDQLEASP-EFMS |
.E.IKH....D..L.....ND..KKEAKEK.TWV.L.RQ....RE..FVRT...EP..LE..P.EFM. | |
Retrocopy | TECIKHFKSQDSFLK>GEANDEKKKEAKEKVTWVQLKRQAAPPREADFVRTNRTEPELLEPIP*EFMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |