RetrogeneDB ID: | retro_sara_120 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_3646:106039..106355(-) | ||
Located in intron of: | ENSSARG00000000324 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSARG00000013129 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 65.14 % |
Parental protein coverage: | 79.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VVPLATYMRIYK-KGDIVDIKGMGTVQKGMP-HKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRIHA |
.VPL.TYM.IYK...DIVD.KGMGTVQK..P.H.C..GK.G.VY.VTQHAVGIV.NKQVKGKILA.RI.. | |
Retrocopy | IVPLVTYMWIYK<ECDIVDKKGMGTVQKETP<HECSQGKPGSVYSVTQHAVGIVINKQVKGKILATRIN- |
Parental | PRENIKHSENDNLLQVKENDQRKKEAKEKGTWVRLERQP |
.R.....S....L.QVK..DQ.KKEAKEKG..V..ERQP | |
Retrocopy | ERVKLSKSQDSFLKQVKKADQKKKEAKEKGHRVQQERQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |