RetrogeneDB ID: | retro_amel_1615 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193742.1:6672..7154(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5H | ||
Ensembl ID: | ENSAMEG00000009115 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d [Source:HGNC Symbol;Acc:845] |
Percent Identity: | 74.07 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAGRKLALKAIDWVVFGEIIPR-NQKAIANSLKSWNEILSSRLATLPEKPPAIDWAYYKANVAKAGLVDD |
MAG.KLALKAIDWV.FGEIIP...QKA..NSLKS..E.L.S.LA..PE.PPAI...YYKA.V.KAGLVDD | |
Retrocopy | MAGGKLALKAIDWVAFGEIIPH<HQKALVNSLKSHHETLTSMLASVPENPPAIN*TYYKASVVKAGLVDD |
Parental | FEKKFNALKVPVPEDKYTVQVDAEEKEDVKSCAEFLSLSKARIEEYEKELEKMRNIIPFDQMTIEDLNEV |
.EKKFNA.K.PV.EDKYT.QVDAE.KE..KSC.EF.S..........KELEKM.NIIPFDQM.IEDLNEV | |
Retrocopy | LEKKFNAQKFPVTEDKYTIQVDAEQKENLKSCVEFFSFKGQD*GI*KKELEKMKNIIPFDQMIIEDLNEV |
Parental | FPETKLDKKKYPYWSHKPIENL |
FPETKLDKKKYPYWSHKPIENL | |
Retrocopy | FPETKLDKKKYPYWSHKPIENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |