RetrogeneDB ID: | retro_ptro_1050 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 15:40280922..40281158(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5H | ||
Ensembl ID: | ENSPTRG00000009628 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d [Source:UniProtKB/TrEMBL;Acc:K7AG29] |
Percent Identity: | 85. % |
Parental protein coverage: | 51.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EDKYTAQVDAEEKEDVKSCAEWVSLSKARIV-EYEKEMEKMKNLIPFDQMTIEDLNEAFPETKLDKKKYP |
EDKYTAQVDAEEKED.K.CAEWVS.SKAR...EYEK..EKM.NLIPFDQMTIEDLNEAFPETKLDKKKY. | |
Retrocopy | EDKYTAQVDAEEKEDGKTCAEWVSFSKARLE<EYEKQLEKMRNLIPFDQMTIEDLNEAFPETKLDKKKYR |
Parental | YWPHQPIENL |
YW.HQPI.NL | |
Retrocopy | YWSHQPIKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 80 .02 RPM |
SRP007412_cerebellum | 0 .00 RPM | 93 .67 RPM |
SRP007412_heart | 0 .00 RPM | 269 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 154 .43 RPM |
SRP007412_liver | 0 .00 RPM | 110 .94 RPM |
SRP007412_testis | 0 .00 RPM | 77 .35 RPM |