Parental gene:

ATP5H, ENSBTAG00000021227

Aliases:None
Description:ATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P13620]
Organism:Cow (Bos taurus)
Coordinates:19:57020083..57024849(+)


>ENSBTAG00000021227
ATGGCTGGACGGAAACTTGCTCTAAAAACCATTGACTGGGTAGCTTTTGGGGAGATCATCCCTCGGAACCAGAAGGCCGT
GGCTAACTCCTTGAAGTCCTGGAATGAGACCCTAACCTCCAGGTTGGCTACTCTGCCTGAGAAGCCACCTGCCATCGACT
GGGCTTACTACAAGGCCAACGTGGCAAAGGCTGGCTTGGTGGATGACTTTGAGAAGAAGTTTAATGCCCTGAAGGTTCCT
ATACCAGAGGATAAATATACTGCCCAGGTGGATGCTGAAGAAAAAGAAGATGTGAAAAGTTGTGCTGAGTTTTTGACTCA
GTCAAAGACCAGGATTCAGGAATATGAGAAAGAGCTGGAGAAGATGAGGAACATAATTCCATTTGATCAGATGACCATTG
AGGACTTGAATGAAGTCTTCCCAGAAACCAAATTAGACAAGAAGAAGTACCCCTACTGGCCTCACAGGCCAATTGAGACC
TTATAA

Library Parental gene expression (RPM)
SRP017611_brain 60 .66 RPM
SRP017611_kidney 167 .50 RPM
SRP017611_liver 55 .88 RPM
ERP005899_muscle 187 .51 RPM
ERP005899_liver 83 .49 RPM
SRP030211_testis 41 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009115 ortholog_one2many 6 retrogenes
retro_amel_1265, retro_amel_1560, retro_amel_1615, retro_amel_1672, retro_amel_1823, retro_amel_921,
Canis familiaris ENSCAFG00000004703 ortholog_many2many 1 retrogene
retro_cfam_178,
Callithrix jacchus ENSCJAG00000014622 ortholog_many2many 15 retrogenes
retro_cjac_1005, retro_cjac_1036, retro_cjac_1159, retro_cjac_1740, retro_cjac_1825, retro_cjac_1831, retro_cjac_2096, retro_cjac_2196, retro_cjac_2488, retro_cjac_2543, retro_cjac_2849, retro_cjac_3141, retro_cjac_456, retro_cjac_737, retro_cjac_739,
Cavia porcellus ENSCPOG00000004022 ortholog_one2many 3 retrogenes
retro_cpor_1429, retro_cpor_547, retro_cpor_972,
Dasypus novemcinctus ENSDNOG00000006913 ortholog_one2many 2 retrogenes
retro_dnov_1725, retro_dnov_412,
Equus caballus ENSECAG00000009487 ortholog_one2many 2 retrogenes
retro_ecab_526, retro_ecab_706,
Echinops telfairi ENSETEG00000003217 ortholog_one2many 8 retrogenes
retro_etel_133, retro_etel_172, retro_etel_1894, retro_etel_266, retro_etel_283, retro_etel_419, retro_etel_713, retro_etel_97,
Felis catus ENSFCAG00000022888 ortholog_many2many 2 retrogenes
retro_fcat_636, retro_fcat_837,
Homo sapiens ENSG00000167863 ortholog_one2many 4 retrogenes
retro_hsap_1133, retro_hsap_1561, retro_hsap_4134, retro_hsap_4223,
Gorilla gorilla ENSGGOG00000013716 ortholog_one2many 4 retrogenes
retro_ggor_1186, retro_ggor_2778, retro_ggor_2827, retro_ggor_884,
Macropus eugenii ENSMEUG00000009346 ortholog_one2many 1 retrogene
retro_meug_788,
Microcebus murinus ENSMICG00000017484 ortholog_one2many 4 retrogenes
retro_mmur_1216, retro_mmur_593, retro_mmur_785, retro_mmur_895,
Myotis lucifugus ENSMLUG00000010620 ortholog_one2many 7 retrogenes
retro_mluc_1267, retro_mluc_1386, retro_mluc_1722, retro_mluc_2076, retro_mluc_2421, retro_mluc_464, retro_mluc_833,
Macaca mulatta ENSMMUG00000011647 ortholog_many2many 1 retrogene
retro_mmul_208,
Mustela putorius furo ENSMPUG00000014048 ortholog_many2many 9 retrogenes
retro_mputfur_1266, retro_mputfur_1466, retro_mputfur_151, retro_mputfur_1589, retro_mputfur_1617, retro_mputfur_268, retro_mputfur_301, retro_mputfur_405, retro_mputfur_904,
Mus musculus ENSMUSG00000034566 ortholog_many2many 6 retrogenes
retro_mmus_1296, retro_mmus_168, retro_mmus_1793, retro_mmus_259, retro_mmus_2794, retro_mmus_298,
Nomascus leucogenys ENSNLEG00000000561 ortholog_one2many 4 retrogenes
retro_nleu_1057, retro_nleu_1728, retro_nleu_2478, retro_nleu_927,
Oryctolagus cuniculus ENSOCUG00000015537 ortholog_one2many 2 retrogenes
retro_ocun_1332, retro_ocun_655,
Otolemur garnettii ENSOGAG00000001990 possible_ortholog 4 retrogenes
retro_ogar_1372, retro_ogar_2438, retro_ogar_436, retro_ogar_736,
Procavia capensis ENSPCAG00000015330 ortholog_one2many 2 retrogenes
retro_pcap_160, retro_pcap_296,
Pongo abelii ENSPPYG00000008615 ortholog_one2many 4 retrogenes
retro_pabe_1291, retro_pabe_3415, retro_pabe_3416, retro_pabe_3470,
Pan troglodytes ENSPTRG00000009628 ortholog_one2many 4 retrogenes
retro_ptro_1050, retro_ptro_2810, retro_ptro_2867, retro_ptro_769,
Rattus norvegicus ENSRNOG00000003626 ortholog_many2many 1 retrogene
retro_rnor_197,
Sorex araneus ENSSARG00000013370 ortholog_one2many 3 retrogenes
retro_sara_434, retro_sara_473, retro_sara_474,
Sarcophilus harrisii ENSSHAG00000018708 ortholog_one2many 2 retrogenes
retro_shar_711, retro_shar_726,
Ictidomys tridecemlineatus ENSSTOG00000015154 ortholog_one2many 2 retrogenes
retro_itri_1086, retro_itri_846,
Tupaia belangeri ENSTBEG00000012545 ortholog_many2many 3 retrogenes
retro_tbel_1122, retro_tbel_1184, retro_tbel_728,
Tursiops truncatus ENSTTRG00000002618 ortholog_one2many 2 retrogenes
retro_ttru_1298, retro_ttru_739,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_319 77.54 85.09
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2. retro_btau_608 69.78 84.47
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3. retro_btau_674 61.11 55.28
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4. retro_btau_823 76.47 52.17
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5. retro_btau_1663 74.55 100.00
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Download FASTA sequences of all ENSBTAG00000021227 retrocopies