RetrogeneDB ID: | retro_ecab_706 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 3:6532015..6532260(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000023313 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5H | ||
Ensembl ID: | ENSECAG00000009487 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d [Source:HGNC Symbol;Acc:845] |
Percent Identity: | 75. % |
Parental protein coverage: | 51.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AGRKLALKAIDWVAFGEIIPRNQK-AIANSLKSWNETLTSRLATLPEAPPAIDWAYYKANVAKAGLVDDF |
AG.KLAL.AIDWVAFGEI.P.NQK.AIANSLKSWNE.LTSRLATLP.......W..YKA.V..AGLVDDF | |
Retrocopy | AGQKLALNAIDWVAFGEIKP*NQK<AIANSLKSWNESLTSRLATLPNS-TRYRWPCYKAGVVEAGLVDDF |
Parental | EKKFNALKVPVPED |
EKKFNA.K.PVP.D | |
Retrocopy | EKKFNAPKMPVPGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 28 .33 RPM |
SRP021940_cerebellum | 0 .10 RPM | 83 .92 RPM |
SRP021940_embryo | 0 .05 RPM | 45 .34 RPM |
SRP021940_placental_villous | 0 .05 RPM | 55 .47 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 27 .37 RPM |
SRP021940_testis | 0 .00 RPM | 43 .16 RPM |