RetrogeneDB ID: | retro_btau_1663 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 8:101049652..101050143(-) | ||
Located in intron of: | ENSBTAG00000046602 | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000014781 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5H | ||
Ensembl ID: | ENSBTAG00000021227 | ||
Aliases: | None | ||
Description: | ATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P13620] |
Percent Identity: | 74.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAGRKLALKTIDWVAFGEIIPRNQ-KAVANSLKSWNETLTS--RLATLPEKPPAIDWAYYKANVAKAGLV |
M.G.KLALK.ID.VA.G..IP.NQ.KA.ANSLKSW.E.......L.TLPEKPPA.DW..Y.ANVAK.GLV | |
Retrocopy | MPGWKLALKAIDRVASGGTIP*NQ>KAFANSLKSWHESFNL*IELVTLPEKPPAVDWVSYMANVAKSGLV |
Parental | DDFEKKFNALKVPIPEDK-YTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRNIIPFDQMTIEDL |
.D.EKKFNALKVP..EDK.YTA.VD.EEKED.KSCAEFL..SKTRIQEYEKELEKMRNIIP.DQMTIED. | |
Retrocopy | GDSEKKFNALKVPVLEDK>YTAKVDPEEKEDMKSCAEFLSLSKTRIQEYEKELEKMRNIIPPDQMTIEDV |
Parental | NEVFPETKLDKKKYPYWPHRPIETL |
NEVFPETKLD..KY.YWPH.P.E.L | |
Retrocopy | NEVFPETKLDRRKYLYWPHKPFENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 83 .49 RPM |
ERP005899_muscle | 0 .05 RPM | 187 .51 RPM |
SRP017611_brain | 0 .00 RPM | 60 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 167 .50 RPM |
SRP017611_liver | 0 .00 RPM | 55 .88 RPM |
SRP030211_testis | 0 .11 RPM | 41 .68 RPM |