RetrogeneDB ID: | retro_ggor_2827 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 9:2892195..2892677(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5H | ||
Ensembl ID: | ENSGGOG00000013716 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVDDF |
M.GRKL.LKT.D.VAFAEIIPQN.KAIA.SLKSWNETLTSRL..LPENPPAID.AYYKA.VAKAGLVDDF | |
Retrocopy | MVGRKLTLKTTDCVAFAEIIPQN*KAIANSLKSWNETLTSRLSTLPENPPAID*AYYKAHVAKAGLVDDF |
Parental | EKKFNALK-VPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEA |
EKKFNALK.V.VPEDKYTAQ.DAEEKEDVKSCAEWVSLSKA.IVEYEK..EKMKNLIPFDQMTIEDL... | |
Retrocopy | EKKFNALK<VSVPEDKYTAQLDAEEKEDVKSCAEWVSLSKAGIVEYEKQKEKMKNLIPFDQMTIEDLKKT |
Parental | FPETKLDKKKYPYWPHQPIENL |
FPETKLDKKKYP..PHQPI..L | |
Retrocopy | FPETKLDKKKYP**PHQPIKDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 116 .34 RPM |
SRP007412_cerebellum | 0 .00 RPM | 70 .01 RPM |
SRP007412_heart | 0 .00 RPM | 121 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 167 .64 RPM |
SRP007412_liver | 0 .00 RPM | 90 .66 RPM |
SRP007412_testis | 0 .00 RPM | 44 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4223 |
Pongo abelii | retro_pabe_3416 |