RetrogeneDB ID: | retro_cjac_2488 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:150375646..150376030(-) | ||
Located in intron of: | ENSCJAG00000019634 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000019639 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000014622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.25 % |
Parental protein coverage: | 80.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGRKLALKTIDWIAFWEIIPQNQKAIANSLKSWNEILTSRLAALPENPPSIDWAYYKANVAKAGLVDDF |
MAG.KLALKTIDWIAFWEIIPQNQKAIANSLKSWNEILTSRLAALPENPP.IDWAYYKA.VAKAGLVDD. | |
Retrocopy | MAGQKLALKTIDWIAFWEIIPQNQKAIANSLKSWNEILTSRLAALPENPPFIDWAYYKASVAKAGLVDDS |
Parental | EKKFNALKVPIPEDPYTALVDAEEKEDVKSCAEWVSLSKARVVEYEKKMEKYKNLIPFE |
EKKFNALKVPIPEDPY.AL.DAEEK.DVKSCAEWVSLSKARVVEYEK..EKYKNLIP.E | |
Retrocopy | EKKFNALKVPIPEDPYAALADAEEK-DVKSCAEWVSLSKARVVEYEKQTEKYKNLIPCE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .47 RPM | 31 .37 RPM |
SRP051959_heart | 0 .60 RPM | 68 .41 RPM |
SRP051959_kidney | 1 .09 RPM | 48 .30 RPM |
SRP051959_liver | 0 .41 RPM | 54 .97 RPM |
SRP051959_lung | 1 .06 RPM | 18 .40 RPM |
SRP051959_lymph_node | 1 .32 RPM | 18 .13 RPM |
SRP051959_skeletal_muscle | 0 .31 RPM | 90 .15 RPM |
SRP051959_spleen | 1 .37 RPM | 21 .87 RPM |