RetrogeneDB ID: | retro_btau_319 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:139909279..139909686(-) | ||
Located in intron of: | ENSBTAG00000030942 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5H | ||
Ensembl ID: | ENSBTAG00000021227 | ||
Aliases: | None | ||
Description: | ATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P13620] |
Percent Identity: | 77.54 % |
Parental protein coverage: | 85.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKF-NALKVPIPEDKYTAQVDAE |
KA.ANSLK.WNET.TSRLA.LPEKPPA.DWA..KANVAKAGL.DDFEK...NA.K.P.PEDKYTAQV..E | |
Retrocopy | KATANSLKFWNETHTSRLANLPEKPPALDWAC-KANVAKAGLKDDFEKEL<NAPKFPMPEDKYTAQVHTE |
Parental | EKEDVKSCAEFLTQSKTRIQEYEKELEKMRNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIETL |
EKEDVKSCAEFL..SK.RI.EYEKELEKMRN.I..DQMT.EDLNEVFPET..DKKKY.Y.PH.P.E.L | |
Retrocopy | EKEDVKSCAEFLSLSKIRIEEYEKELEKMRNLITLDQMTTEDLNEVFPETISDKKKYSY*PHKPTENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 83 .49 RPM |
ERP005899_muscle | 0 .32 RPM | 187 .51 RPM |
SRP017611_brain | 0 .32 RPM | 60 .66 RPM |
SRP017611_kidney | 0 .18 RPM | 167 .50 RPM |
SRP017611_liver | 0 .08 RPM | 55 .88 RPM |
SRP030211_testis | 0 .18 RPM | 41 .68 RPM |