RetrogeneDB ID: | retro_mmus_1296 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:87441213..87441690(-) | ||
Located in intron of: | ENSMUSG00000022019 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp5h | ||
Ensembl ID: | ENSMUSG00000034566 | ||
Aliases: | Atp5h, 0610009D10Rik | ||
Description: | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d [Source:MGI Symbol;Acc:MGI:1918929] |
Percent Identity: | 83.44 % |
Parental protein coverage: | 99.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAGRKLALKTIDWV-SFVEVMPQNQKAIGNALKSWNETFHARLASLSEKPPAIDWAYYRANVAKPGLVDD |
MAG.KLALKTIDW..SFV...P.NQKA.GNALKSWNETFH.R.ASLSEKPPAIDWA.YRANVAKPGLVDD | |
Retrocopy | MAGHKLALKTIDWD<SFV*ITPPNQKATGNALKSWNETFHPRSASLSEKPPAIDWAFYRANVAKPGLVDD |
Parental | FE-KKYNALKIPVPEDKYTALVD-QEEKEDVKSCAEFVSGSQLRIQEYEKQLEKMRNIIPFDQMTIDDLN |
FE.K.YNALKIPVPEDK.TALVD.QEE.EDV.SCAEFVSG.QLR.QE.EKQLEK.RN.IPFDQ.T.DD.N | |
Retrocopy | FE<KQYNALKIPVPEDKHTALVD<QEEEEDVESCAEFVSGPQLRTQECEKQLEKTRNTIPFDQLTSDDWN |
Parental | EIFPETKLDKKKYPYWPHQPIEN |
EIFPE.KLDKKKYPYWPHQP.EN | |
Retrocopy | EIFPEAKLDKKKYPYWPHQPMEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 86 .98 RPM |
SRP007412_cerebellum | 0 .09 RPM | 92 .53 RPM |
SRP007412_heart | 0 .00 RPM | 368 .68 RPM |
SRP007412_kidney | 0 .06 RPM | 241 .89 RPM |
SRP007412_liver | 0 .00 RPM | 91 .29 RPM |
SRP007412_testis | 0 .00 RPM | 58 .45 RPM |