RetrogeneDB ID: | retro_cjac_1159 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 13:63793884..63794365(-) | ||
Located in intron of: | ENSCJAG00000020707 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000020727 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000014622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAGRKLALKTIDWIAFWEIIPQNQKAIANSLKSWNEILTSRLAALPENPPSIDWAYYKANVAKAGLVDDF |
M.GRKLALKTIDWIAFWEIIPQNQKAIANSLKSWNEILTSRLAALPENP.SIDWAYYKANVAKA.LVDDF | |
Retrocopy | MPGRKLALKTIDWIAFWEIIPQNQKAIANSLKSWNEILTSRLAALPENPSSIDWAYYKANVAKASLVDDF |
Parental | EKKFNALKVPIPEDPYTALVDAEEKEDVKSCAEWVSLSKARVVEYEKKMEKYKNLIPFEQMTIEDLNEAF |
EKKFNALKVPIPEDPYTALVDAEEKEDVKSCAEWVSLSKARVVE..KKMEKYKNLIPFEQMTIEDLN.AF | |
Retrocopy | EKKFNALKVPIPEDPYTALVDAEEKEDVKSCAEWVSLSKARVVEHKKKMEKYKNLIPFEQMTIEDLNKAF |
Parental | -PETKLDK-QKYPYWPHQPIENL |
.P........KYPYWPHQPIENL | |
Retrocopy | <PRNQIGQ<SKYPYWPHQPIENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .16 RPM | 31 .37 RPM |
SRP051959_heart | 0 .21 RPM | 68 .41 RPM |
SRP051959_kidney | 0 .07 RPM | 48 .30 RPM |
SRP051959_liver | 0 .15 RPM | 54 .97 RPM |
SRP051959_lung | 0 .05 RPM | 18 .40 RPM |
SRP051959_lymph_node | 0 .16 RPM | 18 .13 RPM |
SRP051959_skeletal_muscle | 0 .20 RPM | 90 .15 RPM |
SRP051959_spleen | 0 .06 RPM | 21 .87 RPM |