RetrogeneDB ID: | retro_pabe_1291 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 15:39721644..39722127(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5H | ||
Ensembl ID: | ENSPPYG00000008615 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d [Source:HGNC Symbol;Acc:845] |
Percent Identity: | 88.2 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAGRKLALKTIDWAAFAEIIPQNQKAIASSLKSWNETLTSRLASLPENPPAIDWAYYKAKVAKAGLVDDF |
MAG.KLALKTIDW.AFAE.IPQNQKAIA..LKSWNETLTSRLA.LPENPPAIDWAYYKA.VAK.GLVDDF | |
Retrocopy | MAG*KLALKTIDWVAFAEMIPQNQKAIANYLKSWNETLTSRLAALPENPPAIDWAYYKASVAKTGLVDDF |
Parental | EKKFNALKIPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAF |
EKKFNALKIPVPEDKYTAQVDAEEKED.K.CAEWVSLSKAR..EYEK..EKM.NLIPFDQMTIEDLN.AF | |
Retrocopy | EKKFNALKIPVPEDKYTAQVDAEEKEDGKTCAEWVSLSKARTGEYEKQLEKMRNLIPFDQMTIEDLNKAF |
Parental | PETKLDKKKYPYWPHQPIENL |
PETKLDKKKY.YW.HQPI.NL | |
Retrocopy | PETKLDKKKYRYWSHQPIKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 101 .35 RPM |
SRP007412_cerebellum | 0 .00 RPM | 83 .30 RPM |
SRP007412_heart | 0 .06 RPM | 181 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 156 .52 RPM |
SRP007412_liver | 0 .06 RPM | 74 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1561 |
Gorilla gorilla | retro_ggor_1186 |