RetrogeneDB ID: | retro_pabe_3470 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9:48246496..48246979(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5H | ||
Ensembl ID: | ENSPPYG00000008615 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d [Source:HGNC Symbol;Acc:845] |
Percent Identity: | 82.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MAGRKLALKTIDWAAFAEIIPQNQKAIASSLKSWNETLTSRLASLPENPPAIDWAYYKAKVAKAGLVDDF |
MAG.KL.LK.IDW....EII..NQK.IA.SL.SWNETLTSRLA.LPENPPAIDWAYYKA.VAKAGLVDDF | |
Retrocopy | MAGQKLTLKIIDWVTSWEIISRNQKVIANSLTSWNETLTSRLAILPENPPAIDWAYYKANVAKAGLVDDF |
Parental | EKKFNALKIPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAF |
EKKFNALK.PVPEDKYTAQVDAEE..DVK.CAEW.SLSKAR..EYEK..EKM.NLIPFDQ.T.EDLNEAF | |
Retrocopy | EKKFNALKFPVPEDKYTAQVDAEE**DVKTCAEWMSLSKARTGEYEKQLEKMRNLIPFDQTTTEDLNEAF |
Parental | PETKLDKKKYPYWPHQPIENL |
PETK.DKKKY.YWPHQPIENL | |
Retrocopy | PETK*DKKKYLYWPHQPIENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .17 RPM | 101 .35 RPM |
SRP007412_cerebellum | 0 .00 RPM | 83 .30 RPM |
SRP007412_heart | 0 .15 RPM | 181 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 156 .52 RPM |
SRP007412_liver | 0 .03 RPM | 74 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4134 |
Pan troglodytes | retro_ptro_2810 |
Gorilla gorilla | retro_ggor_2778 |
Callithrix jacchus | retro_cjac_456 |