RetrogeneDB ID: | retro_cjac_1831 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:104249439..104249922(+) | ||
Located in intron of: | ENSCJAG00000009127 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000014622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAGRKLALKTIDWIAFWEIIPQNQKAIANSLKSWNEILTSRLAALPENPPSIDWAYYKANVAKAGLVDDF |
MAG.KLALKTIDWIAF.EIIPQNQKAIAN.LKSWNEILTSR.AALP.NPPSI.WAYYKANVAKAGLVDD. | |
Retrocopy | MAGQKLALKTIDWIAFSEIIPQNQKAIANFLKSWNEILTSRFAALPKNPPSIGWAYYKANVAKAGLVDDL |
Parental | EKKFNALKVPIPEDPYTALVDAEEKEDVKSCAEW-VSLSKARVVEYEKKMEK-YKNLIPFEQMTIEDLNE |
EKKFNALKVP.PEDPYTAL.DAEE..DVKSCAEW.VS.SKARVVEYEK.MEK..KNLIPFEQMT.EDLNE | |
Retrocopy | EKKFNALKVPLPEDPYTALMDAEEIDDVKSCAEW<VSPSKARVVEYEKQMEK>VKNLIPFEQMTTEDLNE |
Parental | AFPETKLDKQKYPYWPHQPIENL |
AFPETKLDKQK.PY.PHQPI.NL | |
Retrocopy | AFPETKLDKQK*PY*PHQPIKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .51 RPM | 31 .37 RPM |
SRP051959_heart | 0 .44 RPM | 68 .41 RPM |
SRP051959_kidney | 0 .33 RPM | 48 .30 RPM |
SRP051959_liver | 0 .82 RPM | 54 .97 RPM |
SRP051959_lung | 0 .72 RPM | 18 .40 RPM |
SRP051959_lymph_node | 0 .50 RPM | 18 .13 RPM |
SRP051959_skeletal_muscle | 0 .15 RPM | 90 .15 RPM |
SRP051959_spleen | 0 .53 RPM | 21 .87 RPM |