RetrogeneDB ID: | retro_mmus_298 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:15067072..15067555(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp5h | ||
Ensembl ID: | ENSMUSG00000034566 | ||
Aliases: | Atp5h, 0610009D10Rik | ||
Description: | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d [Source:MGI Symbol;Acc:MGI:1918929] |
Percent Identity: | 90.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAGRKLALKTIDWVSFVEVMPQNQKAIGNALKSWNETFHARLASLSEKPPAIDWAYYRANVAKPGLVDDF |
MAGRKLALKTIDWVSFVE.MPQNQKAIGNALKSWNETFH.RLASLSEK.P.IDWAYY.ANVAKPGLVDDF | |
Retrocopy | MAGRKLALKTIDWVSFVEIMPQNQKAIGNALKSWNETFHTRLASLSEKSPVIDWAYYKANVAKPGLVDDF |
Parental | EKKYNALKIPVPEDKYTALVDQEEKEDVKSCAEFVSGSQLRIQEYEKQLEKMRNIIPFDQMTIDDLNEIF |
EKKYNALKIPVPEDKYTALVDQEEKE.VK..AEFVS.SQLR.QEYEKQLEK.RNIIPFD.MT.DDLN.IF | |
Retrocopy | EKKYNALKIPVPEDKYTALVDQEEKENVKNGAEFVSRSQLRTQEYEKQLEKARNIIPFD*MTSDDLNKIF |
Parental | PETKLDKKKYPYWPHQPIENL |
PETKLDKKKYPYWPHQP.ENL | |
Retrocopy | PETKLDKKKYPYWPHQPMENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 86 .98 RPM |
SRP007412_cerebellum | 0 .00 RPM | 92 .53 RPM |
SRP007412_heart | 0 .25 RPM | 368 .68 RPM |
SRP007412_kidney | 0 .12 RPM | 241 .89 RPM |
SRP007412_liver | 0 .05 RPM | 91 .29 RPM |
SRP007412_testis | 0 .05 RPM | 58 .45 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_70067 | 53 libraries | 169 libraries | 399 libraries | 348 libraries | 103 libraries |