RetrogeneDB ID:

retro_ttru_1298

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_109934:66443..66709(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP5H
Ensembl ID:ENSTTRG00000002618
Aliases:None
Description:ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d [Source:HGNC Symbol;Acc:845]


Retrocopy-Parental alignment summary:






>retro_ttru_1298
CAGTTTAATGTCTTGAAGGTTTCTGTGCCAGAGAATAAATATACTGCCAGTTGGACAGTGAAGAAAAAGAAGATGTGAAA
AGTTATGCTGAGTTTTTGTCTCTCTCAAAGGCCAGAATTGTGGAGTACAAGAAAGAGCTGAAGAAGATGAAGAATATAAT
TACATTTGATCAGATGACCATTGGGGACTTGAATAAAGTCTTTCCGGAAACTAAATTAGACAAGTAGAAGTATCTCTACT
GACCTCACAAGCCAATTGAGAATTTA

ORF - retro_ttru_1298 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.44 %
Parental protein coverage: 55.28 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalKFNALKVPVPEDKYTA-QVDAEEEKDVKICAEFLSLSKTRIEEYKKELEKMKNIIPFDQMTIEDLNEVFP
.FN.LKV.VPE.KYTA.Q.D.EE..DVK..AEFLSLSK.RI.EYKKEL.KMKNII.FDQMTI.DLN.VFP
RetrocopyQFNVLKVSVPENKYTA<QLDSEEKEDVKSYAEFLSLSKARIVEYKKELKKMKNIITFDQMTIGDLNKVFP
ParentalDTKLDKKKYPYWPHQPIEQL
.TKLDK.KY.Y.PH.PIE.L
RetrocopyETKLDK*KYLY*PHKPIENL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1298 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1298 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 28 parental genes, and 109 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000091156 retrocopies
Bos taurus ENSBTAG000000212275 retrocopies
Canis familiaris ENSCAFG000000047031 retrocopy
Callithrix jacchus ENSCJAG0000001462215 retrocopies
Cavia porcellus ENSCPOG000000040223 retrocopies
Dasypus novemcinctus ENSDNOG000000069132 retrocopies
Equus caballus ENSECAG000000094872 retrocopies
Echinops telfairi ENSETEG000000032178 retrocopies
Felis catus ENSFCAG000000228882 retrocopies
Homo sapiens ENSG000001678634 retrocopies
Gorilla gorilla ENSGGOG000000137164 retrocopies
Macropus eugenii ENSMEUG000000093461 retrocopy
Microcebus murinus ENSMICG000000174844 retrocopies
Myotis lucifugus ENSMLUG000000106207 retrocopies
Macaca mulatta ENSMMUG000000116471 retrocopy
Mustela putorius furoENSMPUG000000140489 retrocopies
Mus musculus ENSMUSG000000345666 retrocopies
Nomascus leucogenys ENSNLEG000000005614 retrocopies
Oryctolagus cuniculus ENSOCUG000000155372 retrocopies
Procavia capensis ENSPCAG000000153302 retrocopies
Pongo abelii ENSPPYG000000086154 retrocopies
Pan troglodytes ENSPTRG000000096284 retrocopies
Rattus norvegicus ENSRNOG000000036261 retrocopy
Sorex araneus ENSSARG000000133703 retrocopies
Sarcophilus harrisii ENSSHAG000000187082 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000151542 retrocopies
Tupaia belangeri ENSTBEG000000125453 retrocopies
Tursiops truncatus ENSTTRG00000002618 2 retrocopies
retro_ttru_1298 , retro_ttru_739,



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