RetrogeneDB ID: | retro_cjac_739 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 10:117228791..117229255(+) | ||
Located in intron of: | ENSCJAG00000017938 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000031485 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000014622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.44 % |
Parental protein coverage: | 96.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KLALKTIDWIAFWEIIPQNQKAIANSLKSWNEILTSRLAALPENPPSIDWAYYKANVAKAGLVDDFEKKF |
KLALKT.DW.AF.EIIPQNQKAIANSLKSWNE.LT.RLA.LPENPP.IDWAYY.ANVAKAGLVDDF.KKF | |
Retrocopy | KLALKTTDWVAFGEIIPQNQKAIANSLKSWNETLTDRLAVLPENPPPIDWAYYEANVAKAGLVDDFDKKF |
Parental | NALKVPIPEDPYTALVDAEEKEDVKSCAEWVSLSKARVVEYEKKMEKYKNLIPFEQMTIEDLNEAFPETK |
NALK.P.PED.YTA.V.A.EKED.KSCA.WVSLSKAR.VEYEK.MEK..N.IPFEQMT.EDLN.AFPETK | |
Retrocopy | NALKLPLPEDQYTAQVGAAEKEDMKSCAAWVSLSKARIVEYEKQMEK-MN*IPFEQMTTEDLNKAFPETK |
Parental | LDKQ-KYPYWPHQPIEN |
LDKQ.KYPYW.HQPIEN | |
Retrocopy | LDKQ<KYPYWLHQPIEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .04 RPM | 31 .37 RPM |
SRP051959_heart | 0 .05 RPM | 68 .41 RPM |
SRP051959_kidney | 0 .00 RPM | 48 .30 RPM |
SRP051959_liver | 0 .04 RPM | 54 .97 RPM |
SRP051959_lung | 0 .00 RPM | 18 .40 RPM |
SRP051959_lymph_node | 0 .00 RPM | 18 .13 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 90 .15 RPM |
SRP051959_spleen | 0 .00 RPM | 21 .87 RPM |