RetrogeneDB ID: | retro_cjac_1005 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 12:111055358..111055837(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000014622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAGRKLALKTIDWIAFWEIIPQNQKAIANSLKSWNEILTSRLAALPENPPSIDWAYYKANVAKAGLVDDF |
MAG.KLALKT..W.AF.EIIPQ.QK.IANSL.S.NE.LTSRLA.LPEN.P.IDWAYYKA.VAKAGLVDDF | |
Retrocopy | MAG*KLALKTTNWVAFGEIIPQSQKVIANSL-SLNENLTSRLATLPENLPAIDWAYYKARVAKAGLVDDF |
Parental | EKKFNALKV-PIPEDPYTALVDAEEKEDVKSCAEWVSLSKARVVEYEKKMEKYKNLIPFEQMTIEDLNEA |
EKKF.AL.V...PED.YT..VDA.EKEDVKS..EW.SLSK.R.VEYEK..EK..NLIPFEQMT.EDLN.A | |
Retrocopy | EKKFDALRV<SMPEDKYTVQVDAAEKEDVKSSVEWASLSKVRIVEYEKQLEKMRNLIPFEQMTTEDLN*A |
Parental | FPETKLDKQKYPYWPHQPIENL |
F.ETKLDK.KY.YWPHQPI.NL | |
Retrocopy | FLETKLDKKKYSYWPHQPIKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 31 .37 RPM |
SRP051959_heart | 0 .00 RPM | 68 .41 RPM |
SRP051959_kidney | 0 .00 RPM | 48 .30 RPM |
SRP051959_liver | 0 .02 RPM | 54 .97 RPM |
SRP051959_lung | 0 .00 RPM | 18 .40 RPM |
SRP051959_lymph_node | 0 .00 RPM | 18 .13 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 90 .15 RPM |
SRP051959_spleen | 0 .00 RPM | 21 .87 RPM |