RetrogeneDB ID: | retro_cpor_972 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_37:22630182..22630538(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5H | ||
Ensembl ID: | ENSCPOG00000004022 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.49 % |
Parental protein coverage: | 77.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RLAALSEKPPAIDWAYYKANVAKAGLVDEFEKKFNALKVPVPEDKYTALVDAEEKEDVKSCAEFVSLSKA |
RLAAL.E.PP...WAY.K..VAKAGLVD..E.KFNAL.VPVP.DK.....DA..KEDV..C.EFVSLSKA | |
Retrocopy | RLAALAENPPVTNWAYSKVSVAKAGLVDDLEAKFNALNVPVPVDK-C*WMDADGKEDVEGCSEFVSLSKA |
Parental | -RIVEYEKQLEKMNNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHQPIENL |
.R.V.YEKQLEKM..I.PFDQ.T.EDLNEVF.ETK...KKY.YWPHQPIENL | |
Retrocopy | <RVVQYEKQLEKMSSIVPFDQVTTEDLNEVFLETKI-VKKYHYWPHQPIENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .27 RPM |
SRP017611_kidney | 0 .00 RPM | 149 .91 RPM |
SRP017611_liver | 0 .00 RPM | 93 .28 RPM |
SRP040447_lung | 0 .00 RPM | 37 .83 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 158 .04 RPM |