RetrogeneDB ID: | retro_pabe_3415 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9:60174586..60175069(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5H | ||
Ensembl ID: | ENSPPYG00000008615 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d [Source:HGNC Symbol;Acc:845] |
Percent Identity: | 85.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MAGRKLALKTIDWAAFAEIIPQNQKAIASSLKSWNETLTSRLASLPENPPAIDWAYYKAKVAKAGLVDDF |
M.GRKLAL.T.D..AFAEI.PQN.KAIA.SLKSWNETLTS.LA.LPENPPAIDWAYYKA.VAKAGLVDDF | |
Retrocopy | MVGRKLAL*TTDCVAFAEIVPQN*KAIANSLKSWNETLTSSLATLPENPPAIDWAYYKAHVAKAGLVDDF |
Parental | EKKFNALKIPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAF |
EKKFNALK.PVPEDKYTAQ.DAEEKEDVKSCAEWVSLSKA.IVEYEK..EK.KNLIPFDQMTIEDL...F | |
Retrocopy | EKKFNALKFPVPEDKYTAQLDAEEKEDVKSCAEWVSLSKAGIVEYEKQKEKIKNLIPFDQMTIEDLKKTF |
Parental | PETKLDKKKYPYWPHQPIENL |
PETKLDKKKYP..PHQPI..L | |
Retrocopy | PETKLDKKKYP**PHQPIKDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 101 .35 RPM |
SRP007412_cerebellum | 0 .00 RPM | 83 .30 RPM |
SRP007412_heart | 0 .00 RPM | 181 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 156 .52 RPM |
SRP007412_liver | 0 .00 RPM | 74 .21 RPM |