RetrogeneDB ID: | retro_cjac_2543 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 5:85048907..85049390(+) | ||
Located in intron of: | ENSCJAG00000001324 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000014622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGRKLALKTIDWIAFWEIIPQNQKAIANSLKSWNEILTSRLAALPENPPSIDWAYYKANVAKAGLVDDF |
MAGRKLALKTIDWIAFWEIIPQNQKAIANSLKSWNEILTSRLAALPENPPSIDWAYYKANVAKAGLVDDF | |
Retrocopy | MAGRKLALKTIDWIAFWEIIPQNQKAIANSLKSWNEILTSRLAALPENPPSIDWAYYKANVAKAGLVDDF |
Parental | EKKFNALKVPIPEDPYTALVDAEEKEDVKSCAEWVSLSKARVVEYEKKMEKYKNLIPFEQMTIEDLNEAF |
EKKFNALKVPIPEDPYTALVDAEEKEDVKSCAEWVSLSKARVVEYEKKMEKYKNLIPFEQMTIEDLNEAF | |
Retrocopy | EKKFNALKVPIPEDPYTALVDAEEKEDVKSCAEWVSLSKARVVEYEKKMEKYKNLIPFEQMTIEDLNEAF |
Parental | PETKLDKQKYPYWPHQPIENL |
PETKLDKQKYPYWPHQPIENL | |
Retrocopy | PETKLDKQKYPYWPHQPIENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .16 RPM | 31 .37 RPM |
SRP051959_heart | 0 .18 RPM | 68 .41 RPM |
SRP051959_kidney | 0 .16 RPM | 48 .30 RPM |
SRP051959_liver | 0 .15 RPM | 54 .97 RPM |
SRP051959_lung | 0 .11 RPM | 18 .40 RPM |
SRP051959_lymph_node | 0 .21 RPM | 18 .13 RPM |
SRP051959_skeletal_muscle | 0 .20 RPM | 90 .15 RPM |
SRP051959_spleen | 0 .06 RPM | 21 .87 RPM |